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Overview
Statement of Need
Release Notes
Users Guide
Getting Started
What PyMedPhys can do
Choose your path
Installation options
Quick Start Guide
Using the CLI
How-to Guides
Gamma
Speeding up gamma calculations
Gamma from 1D ASCII data
The Effects of Noise on Gamma
Gamma from DICOM
Interpolation
Multilinear Interpolation Comparison
Adding a Linac
Tunnels
SAMBA SSH Tunnelling
Backups using rsync
Background
Automatic Contouring Project
DICOM de-identification
Elekta Logfile Decoding and Indexing
Technical Reference
Library Reference
Index
DICOM
Gamma
Interpolation
Mosaiq
MetersetMap
TRF
Electron Cutout Factors
Pinnacle Export Tool
Experimental Modules
Pseudonymisation Tool
CLI Reference
Graphical apps
DICOM Files
Elekta Binary Logfiles
iCom listener
Pinnacle Export Tool
Pseudonymisation Tool
Contributors Guide
Contributing to PyMedPhys
Repository Information
Repository File Structure
Documentation Guide
pymedphys Release Procedure
PyMedPhys CI/CD Workflows
Reviewing automated dependency update PRs
Lazy imports and optional dependencies
DICOM de-identification design
DICOM de-identification requirements-to-tests matrix
Run the MIDI-B de-identification benchmark
Validate de-identified DICOM with independent validators
Check the face block against HaN-Seg
Check the text detector against HaN-Seg
DICOM coordinate validation
DICOM coordinates and gamma, illustrated
Faster gamma calculations: a reproducible benchmark
Compare gamma performance across PyMedPhys versions
Gamma performance: a two-hour workstation audit
Gamma performance: a completed workstation audit
Gamma scaling: recorded workstation evidence
Workstation Setup Guides
Windows Setup
Linux Setup
macOS Setup
Tips & Tricks
Use the development environment in Jupyter
Git with SSH on Windows
Deep Dive
Why Open Source?
Creating a Streamlit Executable
Repository
Suggest edit
Open issue
.rst
.pdf
Tips & Tricks
Tips & Tricks
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Use the development environment in Jupyter
Git with SSH on Windows
