Pinnacle Export Tool

Export DICOM objects from raw Pinnacle data.

usage: pymedphys labs pinnacle [-h] {export} ...

Positional Arguments

pinnacle

Possible choices: export

Sub-commands:

export

Export a raw file to DICOM

pymedphys labs pinnacle export [-h] [-o OUTPUT_DIRECTORY] [-v] [-l]
                               [-m MODALITY] [-p PLAN] [-t TRIAL] [-i IMAGE]
                               [-u UID_PREFIX]
                               input_path

Positional Arguments

input_path

Root Patient directory of raw Pinnacle data (directory containing the ‘Patient’ file). Alternatively a TAR archive can be supplied.

Named Arguments

-o, --output-directory
	Directory in which to generate DICOM objects.
-v, --verbose	Flag to output debug information. Default: False
-l, --list	List all plans and trials available. Default: False
-m, --modality	Modalities to export (CT exports the plans primary planning CT). Default: []
-p, --plan	The name of the plan to export (first plan will be exported by default).
-t, --trial	The name of the trial to export (first trial will be exported by default).
-i, --image	The UID of an image series you would like to export (or ‘all’ to export all images).
-u, --uid-prefix
	Prefix to use for generated UIDs.