Linux Setup

Overview

• Install Python 3.12.3

• Install pipx with pip install pipx

• Install uv with curl -LsSf https://astral.sh/uv/install.sh | sh

• Clone the PyMedPhys git repo

• Run uv sync --extra all --group dev within the root of the repo

• Run uv run -- pre-commit install

• Install pandoc via your package manager

  • eg. sudo apt-get install pandoc

You’re good to go.

Opinionated Recommendations

• Install Python with pyenv

  • Install prerequisites

  • Install pyenv

  • Configure pyenv

• Install VSCode as your code editor

• Install Jupyter Lab to work with Notebooks