Pinnacle Export Tool
Contents
Pinnacle Export Tool#
Export DICOM objects from raw Pinnacle data.
usage: pymedphys experimental pinnacle [-h] {export} ...
Positional Arguments#
- pinnacle
Possible choices: export
Sub-commands:#
export#
Export a raw file to DICOM
pymedphys experimental pinnacle export [-h] [-o OUTPUT_DIRECTORY] [-v] [--mrn]
[-l] [-m MODALITY] [-p PLAN] [-t TRIAL]
[-i IMAGE] [-u UID_PREFIX] [-r ROISKIP]
input_path
Positional Arguments#
- input_path
Root Patient directory of raw Pinnacle data (directory containing the ‘Patient’ file). Alternatively a TAR archive can be supplied.
Named Arguments#
- -o, --output-directory
Directory in which to generate DICOM objects.
- -v, --verbose
Flag to output debug information.
Default: False
- --mrn
Append the Patient ID/MRN to the end of the name of the export folder
Default: False
- -l, --list
List all plans and trials available.
Default: False
- -m, --modality
Modalities to export (CT exports the plans primary planning CT).
Default: []
- -p, --plan
The name of the plan to export (first plan will be exported by default).
- -t, --trial
The name of the trial to export (first trial will be exported by default).
- -i, --image
The UID of an image series you would like to export (or ‘all’ to export all images).
- -u, --uid-prefix
Prefix to use for generated UIDs.
- -r, --roiskip
Regular expression defining which ROIs to skip. Note that you will probably need to enclose your regular expression in single-quotes. For example ‘Skin|.*_obj|RadCalc’ .