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PyMedPhys
Overview
Statement of Need
Release Notes
Users Guide
Getting Started
Quick Start Guide
Using the CLI
How-to Guides
Gamma
Speeding up gamma calculations
Gamma from 1D ASCII data
The Effects of Noise on Gamma
Gamma from DICOM
Adding a Linac
Tunnels
SAMBA SSH Tunnelling
Backups using rsync
Background
Automatic Contouring Project
Elekta Logfile Decoding and Indexing
Technical Reference
Library Reference
Alphabetical Index
DICOM
Gamma
Mosaiq
MetersetMap
TRF
Electron Cutout Factors
Experimental Modules
Pinnacle Export Tool
Pseudonymisation Tool
CLI Reference
DICOM Files
Elekta Binary Logfiles
iCom listener
Pinnacle Export Tool
Pseudonymisation Tool
Contributors Guide
Overview
Repository Information
Repository File Structure
Documentation Guide
pymedphys Release Procedure
Workstation Setup Guides
Windows Setup
Linux Setup
MacOS Setup
Tips & Tricks
Add Jupyter kernel with
poetry
Setting up OpenSSH on Windows 10
Deep Dive
Why Open Source?
Creating a Streamlit Executable
repository
open issue
Alphabetical Index
Index
A
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C
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D
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E
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G
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I
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L
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M
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P
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R
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S
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T
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V
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Z
A
active_trial (pymedphys.experimental.pinnacle.PinnaclePlan property)
anonymise() (in module pymedphys.dicom)
C
calculate() (in module pymedphys.metersetmap)
calculate_deformability() (in module pymedphys.electronfactors)
calculate_percent_prediction_differences() (in module pymedphys.electronfactors)
connect() (in module pymedphys.mosaiq)
convert_point() (pymedphys.experimental.pinnacle.PinnaclePlan method)
D
depth_dose() (in module pymedphys.dicom)
dicom_dose_interpolate() (in module pymedphys.dicom)
display() (in module pymedphys.metersetmap)
dose_inst_uid (pymedphys.experimental.pinnacle.PinnaclePlan property)
E
execute() (in module pymedphys.mosaiq)
export_dose() (pymedphys.experimental.pinnacle.PinnacleExport static method)
export_image() (pymedphys.experimental.pinnacle.PinnacleExport method)
export_plan() (pymedphys.experimental.pinnacle.PinnacleExport static method)
export_struct() (pymedphys.experimental.pinnacle.PinnacleExport static method)
G
gamma() (in module pymedphys)
generate_uids() (pymedphys.experimental.pinnacle.PinnaclePlan method)
get_default_pseudonymisation_keywords() (in module pymedphys.experimental.pseudonymisation)
grid() (in module pymedphys.metersetmap)
I
identify() (in module pymedphys.trf)
image (pymedphys.experimental.pinnacle.PinnacleImage property)
image_header (pymedphys.experimental.pinnacle.PinnacleImage property)
image_info (pymedphys.experimental.pinnacle.PinnacleImage property)
image_set (pymedphys.experimental.pinnacle.PinnacleImage property)
images (pymedphys.experimental.pinnacle.PinnacleExport property)
is_prefix_valid() (pymedphys.experimental.pinnacle.PinnaclePlan static method)
is_valid_strategy_for_keywords() (in module pymedphys.experimental.pseudonymisation)
iso_center (pymedphys.experimental.pinnacle.PinnaclePlan property)
L
log_images() (pymedphys.experimental.pinnacle.PinnacleExport method)
log_plan_names() (pymedphys.experimental.pinnacle.PinnacleExport method)
log_trial_names() (pymedphys.experimental.pinnacle.PinnacleExport method)
log_trial_names_in_plan() (pymedphys.experimental.pinnacle.PinnacleExport method)
logger (pymedphys.experimental.pinnacle.PinnacleExport property)
(pymedphys.experimental.pinnacle.PinnacleImage property)
(pymedphys.experimental.pinnacle.PinnaclePlan property)
M
machine_info (pymedphys.experimental.pinnacle.PinnaclePlan property)
module
pymedphys.cli.dicom
pymedphys.cli.experimental.dicom
pymedphys.cli.experimental.pinnacle
pymedphys.cli.icom
pymedphys.cli.trf
pymedphys.dicom
pymedphys.electronfactors
pymedphys.experimental.pinnacle
pymedphys.experimental.pseudonymisation
pymedphys.metersetmap
pymedphys.mosaiq
pymedphys.trf
P
parameterise_insert() (in module pymedphys.electronfactors)
path (pymedphys.experimental.pinnacle.PinnacleImage property)
(pymedphys.experimental.pinnacle.PinnaclePlan property)
patient_info (pymedphys.experimental.pinnacle.PinnacleExport property)
patient_position (pymedphys.experimental.pinnacle.PinnaclePlan property)
pinnacle (pymedphys.experimental.pinnacle.PinnacleImage property)
(pymedphys.experimental.pinnacle.PinnaclePlan property)
PinnacleExport (class in pymedphys.experimental.pinnacle)
PinnacleImage (class in pymedphys.experimental.pinnacle)
PinnaclePlan (class in pymedphys.experimental.pinnacle)
plan_info (pymedphys.experimental.pinnacle.PinnaclePlan property)
plan_inst_uid (pymedphys.experimental.pinnacle.PinnaclePlan property)
plans (pymedphys.experimental.pinnacle.PinnacleExport property)
points (pymedphys.experimental.pinnacle.PinnaclePlan property)
primary_image (pymedphys.experimental.pinnacle.PinnaclePlan property)
profile() (in module pymedphys.dicom)
pseudonymisation_dispatch (pymedphys.experimental.pseudonymisation attribute)
pseudonymise() (in module pymedphys.experimental.pseudonymisation)
pymedphys.cli.dicom
module
pymedphys.cli.experimental.dicom
module
pymedphys.cli.experimental.pinnacle
module
pymedphys.cli.icom
module
pymedphys.cli.trf
module
pymedphys.dicom
module
pymedphys.electronfactors
module
pymedphys.experimental.pinnacle
module
pymedphys.experimental.pseudonymisation
module
pymedphys.metersetmap
module
pymedphys.mosaiq
module
pymedphys.trf
module
R
read() (in module pymedphys.trf)
S
spline_model() (in module pymedphys.electronfactors)
spline_model_with_deformability() (in module pymedphys.electronfactors)
struct_inst_uid (pymedphys.experimental.pinnacle.PinnaclePlan property)
T
trial_info (pymedphys.experimental.pinnacle.PinnaclePlan property)
trials (pymedphys.experimental.pinnacle.PinnaclePlan property)
V
visual_alignment_of_equivalent_ellipse() (in module pymedphys.electronfactors)
Z
zyx_and_dose_from_dataset() (in module pymedphys.dicom)